AUB HPC user guide
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Overview
Hardware Resources
Operating system
Scheduler
Partitions
Storage
Getting connected
Connecting to a terminal
Tools for connecting
Generating a ssh private-public key pair
Login to the HPC cluster using a ssh public key
Connecting to a graphical user interface
Creating SSH tunnels
Transferring data
scp
rsync
sftp
winscp
cyberduck
filezilla
mobaxterm
Job scripts
Job scripts examples
Batch job submission and monitoring procedure
Jobs time limits and checkpoints
SLURM cheatsheet help
Submitting a job
List of running jobs
Remove a job from the queue
List of hosts and queues/partitions on the cluster
Applications
Useful
module
commands
Installed applications, tools and scientific libraries
Interactive jobs - Desktop environment on a compute nodes
Recommended workflow
An interactive job on a compute node
Create/edit folder and files
submit the job
Create a ssh tunnel
Connect using a vnc viewer (client) to the ssh tunnel on localhost
Scientific Computing Environments
Parallel Computing
GPU computing
Python
Astrophysics Applications and Libraries
Molecular dynamics
Machine Learning - Deep Learning - Artificial Intelligence jobs
Large language models
The Matlab environment
The Ansys Fluent environment
Oil and Gas Applications
Abaqus
CST
Pari - Computer Algebra